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    Home » Resources

    5 Mistakes to Avoid When Baking with Whole Wheat Flour

    Published: Feb 28, 2023 by WholeWheatKitchen · This post may contain affiliate links · 10 Comments

    Baking with whole wheat flour can be a little tricky. With the right knowledge and a desire to learn anyone can do it with great success. You might be surprised to discover you actually like the results of your baked goods better with whole wheat flour than with all purpose flour. We are going to share 5 mistakes to avoid when you’re baking with whole wheat flour, and help fast track you on your journey to eating healthier. 

    Half of a whole wheat zucchini muffins with two muffins stacked behind it.
    Zucchini muffins made with hard white wheat flour

    1. Using the Wrong Type of Flour

    Whether you are milling your own flour or buying it. Using flour made from the right type of wheat for your project is important. There are a few different types of wheat, and some are better suited for different baked goods than others. Choosing the right kind for your baking project can make all the difference. 

    The Three Main Types of Wheat:

    • Hard red (whole wheat flour). When you buy regular whole wheat flour it is most likely made from hard red wheat. This wheat has the boldest flavor and also the darkest color. It is best suited for yeast breads that you want to have a nuttier, wheat flavor, such as, an artisan loaf.
    • Hard white (whole white wheat flour or white whole wheat flour). This is our favorite, and we use it for most of our baking. It’s like an all purpose whole wheat flour. It comes from the hard white wheat berry, and is great for almost everything, from soft sandwich bread, to muffins, quick breads, and pancakes.
    • Soft white (whole wheat pastry flour). This is great if you want a softer, more delicate texture in your baked goods. Whole wheat pastry flour comes from the soft white wheat berry. It is lower in protein than hard white and hard red, therefore does not do well in yeast doughs where gluten formation is required. It is best for baked goods leavened with baking powder or baking soda. Try it in things like pancakes, muffins, cakes, and pie crust.

    Just experiment and find what you like best. Some people like to mix different flours to create a balance of flavor and texture that they enjoy. The sky's the limit! 

    2. Using Too Much Flour

    It is important to measure flour properly. Using too much flour can make your baked goods dry, dense, crumbly, and not rise properly. Weighing your flour will give you the most accurate and consistent results. If you don’t have a scale, then use the scoop and level method.  When measuring flour: fluff your flour, then scoop your cup full without pressing it against the container, scrape the top off with a straight edge spatula or knife. We use an offset spatula. 

    Whole wheat flour contains all three parts of the whole wheat berry, the bran, the germ, and the endosperm. It absorbs more moisture than regular all purpose flour which consists only of the endosperm. Thus, you must be careful when substituting whole wheat flour for all purpose flour in recipes. 

    Weights for Whole Wheat Flours

    Hard red wheat flour 1 cup = 136 grams

    Hard white wheat flour 1 cup = 128 grams

    Soft white wheat pastry flour 1 cup = 120 grams

    A single serve whole wheat sponge cake with strawberry sauce and whipped cream on top.
    Sponge cake made with hard white wheat flour

    3. Substituting 1:1 Whole Wheat flour for All Purpose flour

    Whole wheat flours typically need more moisture than all purpose flour. The amount of moisture needed also depends on what type of wheat you are using. Hard white wheat will be the closest to all purpose flour and you can usually do a 1:1 swap in muffins, quick breads, pancakes, and waffles. Yeast doughs are the most sensitive and should never be swapped 1:1. 

    We are working on a guide for converting recipes from all purpose flour to whole wheat flours. Sign up for our emails or follow us on Instagram if you want to know when it comes out.

    4. Using Old Flour

    One of the most common complaints people have about baking with whole wheat flour is the “bitter taste”. Whole wheat flour should not taste bitter. The bitter taste comes from flour being too old and is starting to go stale. Remember, whole wheat flour contains all three parts of the wheat berry, the bran, the germ and the endosperm. It has a much shorter shelf life than all purpose flour, which is made from only the endosperm. Check the date on your flour and smell it before using, if it smells stale then don’t use it. You can prolong the life of your whole wheat flours by storing them in the refrigerator or freezer. Just bring it to room temperature before using it in your recipes.

    Whole wheat hamburger buns on a cutting board with one sliced to show the inside.
    Hamburger buns made with hard white wheat flour

    5. Expecting an All Purpose Flour Result

    Whole wheat baked goods are going to be different from baked goods made with all purpose flour, it’s just a fact. BUT, that does not mean they can’t be good! In fact, a lot of baked goods are superior when they are made with whole wheat flour. All purpose flour is bland, and tasteless, and, not to mention, lacks nutrition. Whole wheat has a nutty flavor, thanks to the bran, and the germ, which gives baked goods a depth of flavor that you will never get from all purpose flour. 

    If you are wary of using whole wheat flour, but want to start eating healthier, then just start with a little bit. You can replace a small amount of the flour with whole wheat flour in your recipe and gradually work your way to 100% whole wheat flour. 

    Strawberry crisp in a white baking dish with a whole wheat crumble topping.
    Crisp topping made with hard white wheat flour

    Baking with whole wheat flour does take a learning curve, but we’re here to take the curve out of learning 😁! Once you get the hang of it, there will be no going back. Just start experimenting and see what works for you. We are here to help you along the way. If you have any questions send us an email or a DM on Instagram and we will do our best to help you.

    If you found this article helpful it would mean the world to us if you would leave a comment or share it with someone who could benefit from it.

    More Resources

    • Collage of whole wheat muffins.
      20 Tips For Making the Best Whole Wheat Muffins
    • A burlap bag of wheat berries with some wheat stalks and a bowl of wheat flour.
      Getting Started with Whole Wheat Flour
    • How to Make Flour From Wheat (grinding your own flour)
    • A handful of whole wheat flour.
      Whole Wheat Flour Buying Guide (where to buy whole wheat flour)

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    1. Erin

      March 24, 2024 at 10:59 am

      can I mix whole wheat with almond flour? right now my recipe calls for half whole wheat and half white flour. I'm trying to get rid of the white flour

      Reply
      • WholeWheatKitchen

        March 25, 2024 at 9:26 am

        Hi, almond flour is a lot different than wheat flour so we wouldn’t recommend using it in place of the white flour. We would suggest substituting the white flour in your recipe for more whole wheat flour. You will most likely need a little less whole wheat flour than it calls for white flour.

        Reply
    2. Alvadine

      July 19, 2024 at 3:24 pm

      I’m thinking about using whole wheat flour to make pretzels. Any suggestions on which flour to use? Appreciate your time.

      Reply
      • WholeWheatKitchen

        July 25, 2024 at 8:48 am

        Hi, we would suggest using hard white wheat flour. Here is our pretzel recipe if you’re interested.

        Reply
      • Sara

        September 09, 2024 at 4:50 pm

        I only use freshly milled flour. I have a recipe I want to adapt that calls for “cake flour”. Is there anything that would be a suitable substitute? Maybe Soft White? Let me k ow your thoughts. Thanks.

        Reply
        • WholeWheatKitchen

          September 11, 2024 at 4:20 pm

          Yes, soft white wheat would be a good substitute. If your recipe has weight measurements, I would substitute it by weight.

          Reply
    3. Kandy Burke

      December 09, 2024 at 11:24 am

      Very practical advice. Thank you l

      Reply
      • WholeWheatKitchen

        December 14, 2024 at 2:18 pm

        Thank you!

        Reply
    4. Lou Ann

      March 31, 2025 at 7:23 am

      I was looking for a specific recipe for white whole wheat chocolate chip cookies and a link to your page popped up. I am so glad I have found this. I have been using whole wheat for quite some time and have learned a lot about it, but your recipes will help me take some of the guess work out of things. This is absolutely wonderful. God bless to both of you for sharing your learning and life experiences in cooking for your family.

      Reply
      • WholeWheatKitchen

        April 09, 2025 at 10:35 am

        Thank you so much, our goal is to help as many people as we can!

        Reply

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